STRINGSTRING
SIT44989.1 SIT44989.1 bsaO bsaO SIT44986.1 SIT44986.1 SIT45000.1 SIT45000.1 rpoA rpoA invA invA gltB gltB spaL spaL spaQ spaQ SIT44982.1 SIT44982.1 SIT44967.1 SIT44967.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT44989.1Type III secretion system transcriptional regulator BsaN. (266 aa)    
Predicted Functional Partners:
bsaO
Type III secretion system protein.
 
     0.869
SIT44986.1
Type III secretion system protein BsaP.
  
    0.781
SIT45000.1
Type III secretion system BasJ.
 
  
 0.639
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.635
invA
Invasion protein InvA.
 
   
 0.613
gltB
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.607
spaL
Putative ATP synthase SpaL; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.583
spaQ
Surface presentation of antigens protein SpaQ.
  
     0.541
SIT44982.1
Hypothetical protein; No homology to any previously reported sequences.
       0.528
SIT44967.1
Type III secretion low calcium response chaperone LcrH/SycD.
  
   
 0.521
Your Current Organism:
Paraburkholderia ribeironis
NCBI taxonomy Id: 1247936
Other names: Burkholderia sp. STM 7168, Burkholderia sp. STM 7217, Burkholderia sp. STM 7296, DSM 101188, LMG 29351, LMG:29351, P. ribeironis, Paraburkholderia ribeironis Bournaud et al. 2017, STM 7296, STM:7296
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